| Masters, K. M., Parkhurst, K. M., and Parkhurst, L. J. (2003) “Native
human TATA binding protein simultaneously binds and bends promoter DNA without
a slow isomerization step or TFIIB requirement.” J. Biol. Chem.
278, 31685-31690 |
| Parkhurst, L. J. Distance Parameters Derived from Time Resolved FRET Measurements
and Their Use in Structural Interpretations of Thermodynamic Quantities
Associated with Protein-DNA Interactions. In Methods in Enzymology,
G. Ackers, ed. |
| Matheson, I., Parkhurst, L. J., and DeSa, R. J. Efficient Integration
of Kinetic Differential Equation Sets Using Matrix Exponentiation. In Methods
in Enzymology, M. Johnson, ed. |
| Hardwidge, P. R., Parkhurst, K. M., Parkhurst, L. J., and Maher, L. J.,
3rd (2003). Reflections on apparent DNA bending by charge variants of bZIP
proteins. Biopolymers 69, 110-7. |
| Parkhurst, L. J., Parkhurst, K. M., Powell, R., Wu, J., and Williams,
S. (2002). Time-resolved fluorescence resonance energy transfer studies
of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes.
Biopolymers 61, 180-200. |
| Hardwidge, P. R., Wu, J., Williams, S. L., Parkhurst, K. M., Parkhurst,
L. J., and Maher, L. J., 3rd (2002). DNA bending by bZIP charge variants:
a unified study using electrophoretic phasing and fluorescence resonance
energy transfer. Biochemistry 41, 7732-42. |
| Powell, R.M., Parkhurst, K.M., and Parkhurst, L.J.,
"Comparison of TATA-binding Protein Recognition of a Variant and
Consensus Promoters", J. Biol. Chemistry 2002, in press. |
| Powell, R.M., Parkhurst, K.M., Brenowitz, M., and Parkhurst, L.J., "Marked
Stepwise Differences within a Common Kinetic Mechanism Characterize TATA-binding
Protein Interactions with Two Consensus Promoters", J. Biol. Chemistry
2001, 276(32), 29782-29791. |
| Wu, J., Parkhurst, K.M., Powell, R.M., Brenowitz, M., and Parkhurst, L.J.,
"DNA Bends in Solution TBP-TATA Complexes are DNA Sequence Dependent", J.
Biol. Chemistry 2001, 276(18), 14614-14622. |
| Wu, J., Parkhurst, K.M., Powell, R.M., and Parkhurst, L.J., "DNA Sequence-Dependent
Differences in TBP-Induced DNA Bending in Solution are Highly Sensitive
to Osmolytes", J. Biol. Chemistry 2001, 276(18), 14623-14627. |
| Parkhurst, K.M., Richards, R.M., Brenowitz, M., and Parkhurst, L.J., "Intermediate
Species Possessing Bent DNA are Present Along the Pathway to Formation of
a Final TBP-TATA Complex", J. Mol. Biol. 1999, 289, 1327-1341. |
| Parkhurst, K.M., Brenowitz, M., and Parkhurst, L.J., "Simultaneous Binding
and Bending of Promoter DNA by the TATA Binding Protein: Real Time Kinetic
Measurements", Biochemistry 1996, 35, 7459-7465. |
| Parkhurst, K.M. and Parkhurst, L.J., "Detection of Point Mutations in
DNA by Fluorescence Energy Transfer", Journal of Biomedical Optics
1996, 1(4), 1-7. |
| Parkhurst, K.M. and Parkhurst, L.J., "Kinetic Studies by Fluorescence
Resonance Energy Transfer Employing a Double-Labeled Oligonucleotide: Hybridization
to the Oligonucleotide Complement and to Single-Stranded DNA", Biochemistry
1995, 34, 285-292. |
| Parkhurst, K.M. and Parkhurst, L.J., "Donor-Acceptor Distance Distributions
in a Double-Labeled Fluorescent Oligonucleotide Both as A Single Strand
and in Duplexes", Biochemistry 1995, 34, 293-300. |
| Parkhurst, L.J. and Parkhurst, K.M., "Changes in the End-to-End Distance
Distribution in an Oligonucleotide Following Hybridization", SPIE
1994, 2137, 475-483. |
